PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000246502
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 371aa    MW: 41197.7 Da    PI: 8.2974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000246502genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05130152123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ Cg+ F+ +++L +H+  H
  MDP0000246502 130 FPCTACGEIFPKPETLDHHQAIH 152
                    89******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.201130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132153IPR007087Zinc finger, C2H2
SuperFamilySSF563994.32E-14155370No hitNo description
Gene3DG3DSA:3.90.228.101.8E-11156370IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MANISTLFNK FLSLLLLLLH LGCFSFIATT NHQTKPHHRR KLLKPTTLKP QKALSTSWSY  60
LKRIFTSKSC KITCTNIIQS HLSTPPRSSN HSIVSLVLPD PDTKYPPGSF PXSGISAGSH  120
QFFPLRNDIF PCTACGEIFP KPETLDHHQA IHHAVSELHD GDSGKNIVQI IFKTGWTDTR  180
KAPEIHRILK IHNSGKILSR FEEYRELVKS KAARNGACRR RDERCIADGN ELLRFHCSTF  240
VCDLGLNGNS GICNHEYCSI CGIIKSGFSP KLDGISTLSS SSRAHVAIPE DIEEEFKFMN  300
VKRAMXVCRV VAGRVGCDSE EDIDDVDKEG GGFDSLVGRG GSGVHSKVDE EELLVYNPRA  360
VLPCFVIIYT V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.91760.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366236.10.0PREDICTED: uncharacterized protein LOC103429889
TrEMBLM5VYP90.0M5VYP9_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s25700.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-101C2H2 family protein